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Challenging Structure Elucidation of Lumnitzeralactone, an Ellagic Acid Derivative from the Mangrove Lumnitzera racemosa

Affiliation
Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, 06120 Halle (Saale), Germany;(J.K.);(J.M.);(T.F.);(L.M.S.);(A.F.)
Kappen, Jonas;
ORCID
0000-0003-3406-0960
Affiliation
Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, 06120 Halle (Saale), Germany;(J.K.);(J.M.);(T.F.);(L.M.S.);(A.F.)
Manurung, Jeprianto;
Affiliation
Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, 06120 Halle (Saale), Germany;(J.K.);(J.M.);(T.F.);(L.M.S.);(A.F.)
Fuchs, Tristan;
Affiliation
Department of NMR-Based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Am Fassberg 11, 37077 Göttingen, Germany;
Vemulapalli, Sahithya Phani Babu;
ORCID
0000-0001-5340-8550
Affiliation
Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, 06120 Halle (Saale), Germany;(J.K.);(J.M.);(T.F.);(L.M.S.);(A.F.)
Schmitz, Lea M.;
Affiliation
Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, 06120 Halle (Saale), Germany;(J.K.);(J.M.);(T.F.);(L.M.S.);(A.F.)
Frolov, Andrej;
ORCID
0000-0002-9226-6265
Affiliation
Research Center for Pharmaceutical Ingredients and Traditional Medicine, National Research and Innovation Agency (BRIN), Jl. M.H. Thamrin No. 8, Jakarta 10340, Indonesia;
Agusta, Andria;
ORCID
0000-0002-2710-469X
Affiliation
Department of Molecular Evolution and Plant Systematics & Herbarium (LZ), Institute of Biology, Leipzig University, Johannisallee 21-23, 04103 Leipzig, Germany;
Muellner-Riehl, Alexandra N.;
ORCID
0000-0002-1266-4344
Affiliation
Department of NMR-Based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Am Fassberg 11, 37077 Göttingen, Germany;
Griesinger, Christian;
ORCID
0000-0003-3043-3571
Affiliation
Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, 06120 Halle (Saale), Germany;(J.K.);(J.M.);(T.F.);(L.M.S.);(A.F.)
Franke, Katrin;
ORCID
0000-0003-2060-8235
Affiliation
Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, 06120 Halle (Saale), Germany;(J.K.);(J.M.);(T.F.);(L.M.S.);(A.F.)
Wessjohann, Ludger A.

The previously undescribed natural product lumnitzeralactone ( 1 ), which represents a derivative of ellagic acid, was isolated from the anti-bacterial extract of the Indonesian mangrove species Lumnitzera racemosa Willd. The structure of lumnitzeralactone ( 1 ), a proton-deficient and highly challenging condensed aromatic ring system, was unambiguously elucidated by extensive spectroscopic analyses involving high-resolution mass spectrometry (HRMS), 1D 1 H and 13 C nuclear magnetic resonance spectroscopy (NMR), and 2D NMR (including 1,1-ADEQUATE and 1,n-ADEQUATE). Determination of the structure was supported by computer-assisted structure elucidation (CASE system applying ACD-SE), density functional theory (DFT) calculations, and a two-step chemical synthesis. Possible biosynthetic pathways involving mangrove-associated fungi have been suggested.

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